Id | System | Description | Temperature (K) | Pressure (bar) | Equilibration (ns) | Time Step (ps) | Program |
95 | Lipid II in POPC membrane ... | System contain 3 lipid II and 125 POPC molocule ... | 310.0 | 1.0 | 10.0 | 4.0 | GROMACS 4.0.7 |
94 | ATP-bound P-gp asymmetric membrane-embedded conformation, Run C ... | P-gp with Mg2+ and ATP in a POPC+cholesterol membrane, cluster analysis, solvent removed ... | 0.0 | 0.0 | 0.0 | 0.0 | GROMACS 3.3.3 |
93 | ATP-bound P-gp asymmetric membrane-embedded conformation, Run C ... | P-gp with Mg2+ and ATP in a POPC+cholesterol membrane, cluster analysis, solvent removed ... | 0.0 | 0.0 | 0.0 | 0.0 | GROMACS 3.3.3 |
92 | Membrane-embedded P-gp with ATP bound, inward-facing conformation, Run A ... | P-gp with Mg2+ and ATP in a POPC+cholesterol membrane, cluster analysis, solvent removed ... | 0.0 | 0.0 | 0.0 | 0.0 | GROMACS 3.3.3 |
91 | ATP-bound P-gp inward facing, membrane-embedded conformation, Run B ... | P-gp with Mg2+ and ATP in a POPC+cholesterol membrane, cluster analysis ... | 300.0 | 1.0 | 10.0 | 0.004 | GROMACS 3.3.3 |
90 | Vancomycin and lipid II forms 2:2 complexes in POPC membrane ... | Vancomycin spontenoursly attach to membrane-bond lipid II, the stracture is from 50 ns simulation end ... | 298.0 | 1.0 | 50.0 | 4.0 | GROMACS 4.0.2 |
89 | 512 acetone | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
88 | P-gp with NCP, ATP in a Cholesterol & POPC bilayer ... | P-gp with NCP, ATP in a Cholesterol & POPC bilayer ... | 0.0 | 1.0 | 5.0 | 0.004 | gromacs 3.3.3 mdrun |
86 | Membrane-embedded P-glycoprotein, solvated ... | central P-gp structure from 300 ns of simulations (combined trajectories) ... | 300.0 | 1.0 | 300.0 | 0.004 | gromacs 3.3.3 mdrun |
85 | DOPC bilayer | 128-DOPC bilayer in 15.0 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
84 | DOPC bilayer | 128-DOPC bilayer in 12.5 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
83 | DOPC bilayer | 128-DOPC bilayer in 10.0 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
82 | DOPC bilayer | 128-DOPC bilayer in 5.0 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
81 | DOPC bilayer | 128-DOPC bilayer in 2.5 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
80 | DOPC | Hydrated 128-DOPC bilayer ... | 350.0 | 1.0 | 100.0 | 0.002 | GROMACS 3.3.3 |
79 | DPPC bilayer | 128-DPPC bilayer in 12.5 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
78 | DPPC bilayer | 128-DPPC bilayer in 10.0 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
77 | DPPC bilayer | 128-DPPC bilayer in 5.0 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
76 | DPPC bilayer | 128-DPPC bilayer in 2.5 mol. % DMSO solution ... | 350.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.3.3 |
75 | DPPC bilayer | Hydrated 128-DPPC bilayer ... | 350.0 | 1.0 | 100.0 | 0.002 | GROMACS 3.3.3 |
74 | 50 Perc Vol TFE | TFE and water volume 1:1, molar 1:4 ... | 0.0 | 1.0 | 2.0 | 0.0 | GROMACS 3.3.3 mdrun |
73 | DPC micelle | DPC micelle composed of 56 lipids solvated with 15,196 SPC water ... | 0.0 | 1.0 | 0.0 | 0.0 | GROMACS 3.3.3 mdrun |
71 | 1000 Carbon tetrachloride ... | Rectangular box; 1000 molecules ... | 0.0 | 1.013 | 5.5 | 0.002 | gromos96 |
70 | 1000 Chloroform | Rectangular box; 1000 molecules ... | 0.0 | 1.013 | 3.0 | 0.002 | gromos96 |
69 | 1000 Methanol | Rectangular box; 1000 molecules ... | 0.0 | 1.013 | 2.0 | 0.002 | gromos96 |
67 | 1024 DMSO | Rectangular box; 1024 molecules ... | 0.0 | 1.013 | 1.0 | 0.002 | gromos96 |
66 | 512 Dimethylether | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
65 | 512 2-methyl-2-butanol ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
64 | 512 2-methyl-2-propanol ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
63 | 512 cyclohexanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
62 | 512 hexanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
61 | 512 pentanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
60 | 512 butanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
59 | 512 (2-propanol) | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
58 | 512 (1-propanol) | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
57 | 512 ethanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
56 | 512 methanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
48 | 512 3-pentanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
47 | 512 2-pentanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
46 | 512 2-butanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
45 | 512 heptanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
44 | 512 octanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 2.0 | 0.002 | gromos96 |
32 | DPPC bilayer | Hydrated 128-DPPC bilayer ... | 323.0 | 1.0 | 190.0 | 0.002 | GROMACS 3.2.1 |
31 | POPC bilayer | Hydrated 128-POPC bilayer ... | 303.0 | 1.0 | 250.0 | 0.002 | GROMACS 3.2.1 |
30 | DOPC bilayer | Hydrated 128-DOPC bilayer ... | 303.0 | 1.0 | 300.0 | 0.002 | GROMACS 3.2.1 |
29 | DMPC bilayer | Hydrated 128-DMPC bilayer ... | 303.0 | 1.0 | 235.0 | 0.002 | GROMACS 3.2.1 |
28 | DLPC bilayer | Hydrated 128-DLPC bilayer ... | 303.0 | 1.0 | 350.0 | 0.002 | GROMACS 3.2.1 |
27 | DLPC bilayer | Hydrated 128-DLPC bilayer ... | 303.0 | 1.0 | 350.0 | 0.002 | GROMACS 3.2.1 |
24 | 512 Cyclohexane | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | GROMOS96 |
23 | 512 glycerol tripropanoate ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
22 | 512 ethyl glycol dipropanoate ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
21 | 512 butyl acetate | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
20 | 512 ethylbutanoate | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
19 | 512 ethylpropanoate | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
18 | 512 propyl acetate | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
17 | 343 toluene | Rectangular box; 343 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
16 | 512 3-pentanon | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
15 | 512 ethyl acetate | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
14 | 512 N-methylacetamide ... | Rectangular box; 512 molecules ... | 301.0 | 1.013 | 0.5 | 0.002 | gromos96 |
12 | 512 methyl ethyl ester ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
11 | 512 acetic acid | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
10 | 512 aceton | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
9 | 512 2-propanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
8 | 512 butylamine | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
7 | 343 diethylether | Rectangular box; 343 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
6 | 512 diethylamine | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
5 | 512 ethane-1,2-diamine ... | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
4 | 512 ethane amine | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
3 | 512 ethanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |
2 | 512 methanol | Rectangular box; 512 molecules ... | 298.15 | 1.013 | 0.5 | 0.002 | gromos96 |