;include = -I/home/564/rrc564/sim/top/ include = -I/home/RChen/Documents/doc/gromosff/ define = integrator = md tinit = 0 dt = 0.004 nsteps = 500000 init_step = 0 comm-mode = Linear nstcomm = 1 nstxout = 500000 nstvout = 500000 nstfout = 0 nstlog = 10000 nstenergy = 10000 nstxtcout = 10000 xtc-precision = 1000 energygrps = TFE SOL nstlist = 2 ns-type = Grid pbc = xyz rlist = 0.8 coulombtype = Reaction-Field rcoulomb-switch = 0 rcoulomb = 1.4 epsilon_r = 1 epsilon-rf = 62 vdwtype = cut-off rvdw-switch = 0 rvdw = 1.4 tcoupl = berendsen tc-grps = System tau-t = 0.1 ref-t = 300 Pcoupl = berendsen Pcoupltype = isotropic tau-p = 1.0 compressibility = 4.6e-5 ref-p = 1.0 gen-vel = yes gen-temp = 300 gen-seed = -1 constraints = all-bonds constraint-algorithm = Lincs unconstrained_start = no